PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS26640 FitnessBrowser__azobra:AZOBR_RS26640 (339 amino acids)

SeqID: AZOBR_RS26640 FitnessBrowser__azobra:AZOBR_RS26640
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 586718: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS26640 FitnessBrowser__azobra:AZOBR_RS26640
MNVDKFSIILTVAVAALFAAAPAKAQTAERTMRLSAAVAQDHPFAAGVSALTACAAEKSG
GKMKIQSFWNAALGSDMQAVQLVRGGSLDMVVASTSPLASLVPAMGVFDLPFLFENETEA
DRILDGAVGQQLSEKLQGVGLVNLAYWENGFRNLTNSRRPIQKWEDLGGTKIRVMQNPVF
MDTFSTLGANAVPMAFSELFTALETRAVDGQENPYANIETGKFYEAQKYLSVTNHAYTPA
VILYSKKIWDGLSSAERDVLQSCAAVARTEERRVNREQSEKSLARLKDLGMQVNELSAEE
RKRMLQKVAPVYEKHAATIGAETMTLLQSELGQLRKANP