PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS26920 FitnessBrowser__azobra:AZOBR_RS26920 (454 amino acids)

SeqID: AZOBR_RS26920 FitnessBrowser__azobra:AZOBR_RS26920
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6686326: Putative 3-hydroxyphenylpropionic acid transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS26920 FitnessBrowser__azobra:AZOBR_RS26920
MPTARSVDVQAFLNEHPFSRYQWLVFALCFFIVLLDGFDTAAIGYIAPSLTTEWGIARPA
LAPVLSAALFGLAFGALSAGPLADRFGRKAILIGSVLVIGTACLASAFSGNLDQLVMLRF
VTGLGLGAAMPNAVTLMSEYCPEGRRAMVTNAMFCGFPLGAAFGGFLAAWMIPLWGWRSV
LVLGGIAPLVLAAVLLVLLPESVRYMVAHNHPVERIRAVLRRISETAAGAAGFVMTEKAP
ATKARNGIAVVLSRGYLVGSVMLWVAYFMGLVIFYALINWMPILFKDAGLAPRDAALIAA
LFPLGGVGAVLSGWLMDRFNANRIIAFGFVLTYGAVYAIGQVAGNVGLLVVTVFAAGTIM
NTAQTSLPALAASFYPTHGRATGVAWMLGLGRFGGIGGSFLVAELARRQLDFTSIFAIVA
VPGLVAALALLVKQFVHPEDRSSGTGRTVEALGH