PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS27150 FitnessBrowser__azobra:AZOBR_RS27150 (433 amino acids)

SeqID: AZOBR_RS27150 FitnessBrowser__azobra:AZOBR_RS27150
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS27150 FitnessBrowser__azobra:AZOBR_RS27150
MDFSPALVLSAAFVALLAFGVPISYATGLASITALLTIMPPLPAISVTAQRIATGLDSFA
LLAIPFFFMAGSIMNRGGIARRLIDCAKVFVGWMPGPLAQITILANMMFGCVSGSAVAAA
SAIGGTMQPSMDKAGYDRSYTAAVNISSCITGLLIPPSGAFIVYSLVSGGTSIAALFVAG
YLPGILLGLAVMIPAWMMAKKRGYARLPSPTLSQSSRALLSALPSLGLIVVVIGGIVGGV
FTATEGSAIAVVYALALALAYRELSLDDIGQILVDTIVATAVVALMVGTSMAMAYVMSLA
EIPQIIGDWVQSVSGNWIIALLLVNIVLLLMGTFLDITPGILIFTPIFLPVLVELGVDPV
HFGVILVFNLSLGIVSPPTGSALFIGCAVARVSIEQVIRPLIPLFAWSTAALLVVTYVPG
LSLWLPSLFGLIK