PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS27535 FitnessBrowser__azobra:AZOBR_RS27535 (785 amino acids)

SeqID: AZOBR_RS27535 FitnessBrowser__azobra:AZOBR_RS27535
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131943: biodegradative arginine decarboxylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS27535 FitnessBrowser__azobra:AZOBR_RS27535
MDFFRRFSFLVCAPAFDPDELEGVRVQQIVAEVERLGFEVVRTRRVEDAELAIRTDAAIG
CMIVDWGKRGLEGKPASLIALARKRGLEMPIILLVRRQRLENIPVDVLNQVDGYVFLAEE
TPEFIAKNLVSRLKQYAETLKTPFFGELVDYAEEGNQLWTCPGHNGGIFYSRSPIGRIFV
EHLGEAVFRDDIDNSVLEMGDLLVHEGPALKAQKEAAKIFGAERTYFVLNGTSASNKIVL
SALVAEDDLVLFDRNNHKAAHHGGLFLGGGIPVFLETDRNAYGLIGPIDHEALDEERIRA
KIRGNPLVKDPDAWKRERPFRAAVIQQCSYDGTIYSAETILAKIGHLCDYILFDEAWAGF
LKFHPLFKGRFAMGLDGLHDGHPGIIATQSTHKQLASFSQASQIHVKDSHIRGQRRRVEH
RRFNETFLLHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGVELRKKIRAIRREF
EERESAPARRWFFDPFVPDRVSFDGAEIAWEEVPTDALASDVRHWVFKPGAHWHGFRHVA
AGYAMTDPNKLTLLTPGFDRRTGAYEEHGIPAPVVAQYLRENRIVPEKNDLNSILFLLTP
GVESSKAGTLLSALVAFKRLHDDNALLEDVIPEFVARRPARYAGRRLRDLCAEMHGFYRE
RRTNELQRRMFRPDHLPEMVMPPREAVRRLVRNDVDYLPIDRIAGRVATTLFVVYPPGIA
TIVPGERLDERARPMIEYLQVFQEGANRFPGFDNEIQGLYRETEPDGSVRFYTYVVREDG
ADARR