PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS27870 FitnessBrowser__azobra:AZOBR_RS27870 (640 amino acids)

SeqID: AZOBR_RS27870 FitnessBrowser__azobra:AZOBR_RS27870
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 11140879: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS27870 FitnessBrowser__azobra:AZOBR_RS27870
MTLSLDTQPRTKPKTKTDTGAGRVRRRIITAVVAGFLASTAPAAWGSAQAADVTWDDIAN
DAKSAGDVLMYGMGVEGKRFSPLKQIDTNSVSRLVPAWSFSFGDEKQRGQETQALVHDGV
IYVTASYSRMFALDARTGKRLWTYAHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASIV
ALNKDTGKVVWRKKFADHKVGYTMTGAPTVVKDQKTGRMLLIHGSSGDEFGVVGRLFARD
PDTGDEIWMRPLVEGHMGRLDGKDSTPTGNAKAPSWPRDKDGQLVEAWNHGGGAPWQSAT
FDVETNTIVIGTGNPAPWNGWARWPGDSLYTSGQAYVDPTTGELKGFYQHTPNDTWDFSG
NNELVLFDYKDASGKTVKATAHADRNGFFYVTDRTKLATAGGEANKPNSVLAAFPFVDGI
TWAKGIDLKTGRPIEVEGQRPPPPAEGEKRGKAVEVSPPFLGGKNWNPMSYSEDTGLFYI
AANHWKEDYWTEHVGYNPGSAYLGMGFRIHKMFEDHVGVLRAIDPTTGKVAWEHKEELPL
WSGTLATAGGLVFTGTGDGYVKAFDAKSGAELWKFQTGSGIISSPVTWELDGVQYVGITT
GYGGAVPLWGGDLADLTTRVTQGGSFWVFKLADVKVSSAK