PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS27935 FitnessBrowser__azobra:AZOBR_RS27935 (317 amino acids)

SeqID: AZOBR_RS27935 FitnessBrowser__azobra:AZOBR_RS27935
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 132121: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS27935 FitnessBrowser__azobra:AZOBR_RS27935
MTFRFGLAAALAAGLMVAPVTGWAQQKIKMGVSIPAATHGWAGGLNWHAQQAEKRLEKQY
PNLDVVIVTARDVGRQANDLEDLVSVQRIDALVILPFESAPMTDPVRAVKQAGKFVTVVD
RGLTDPSIQDLYVAGNNPQMGEVSARFMKEKMGGKGDIVVLRGIPTVIDNQRVDAFMKEI
EGTQIKVLGMQYANWNRDDGFKVMQDFLSRFPKIDAVWAQDDDIALGVIEAVKQAGREKE
MFILGGAGMKDMIKRVMDKDVLVPADVLYPPAMIAEAMEITAKHLVEKAPIQKEYIIEAT
LVTPENAAKYYYPDSPF