PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS27940 FitnessBrowser__azobra:AZOBR_RS27940 (329 amino acids)

SeqID: AZOBR_RS27940 FitnessBrowser__azobra:AZOBR_RS27940
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141728: Ribose transport system permease protein rbsC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS27940 FitnessBrowser__azobra:AZOBR_RS27940
MPEATRKPSSGFDLKLYGPFLALAALIVLGTIVNPVFLSPGNIGNVLTRTAFIGIIAVGA
TFVITAGGIDLSVGSLAAFASGVMIVVMNALVGSMGAGLPVILIGVLVALGLGLVAGLVN
GLLVTKGRMEAFIVTLGTMGIFRSLVTYIADGGTLSLNSEIRTIYRPVYYGGVFGISYPI
LAFAVVALIGALIMYRTRFGRYCAAIGSSEDVARYSAINVDRVKLLAFVLQGICVAIAVV
IYVPRLGSASATTGLLWELEAIAAVIIGGTMLKGGYGRIWGTVVGAVMLTLIDNILNLTG
AISVYLNGTIQGVIIIVAVLLQRGTVARR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory