PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS28130 FitnessBrowser__azobra:AZOBR_RS28130 (417 amino acids)

SeqID: AZOBR_RS28130 FitnessBrowser__azobra:AZOBR_RS28130
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 113644: Rubredoxin-NAD(+) reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS28130 FitnessBrowser__azobra:AZOBR_RS28130
MGGPAQAEPADGGMVIVGAGQGGLQVAESLRAEGYDGPITLIGEEASAPYHRPPLSKAIL
AGTMEEAQLAIRGAEFFERQRIALLTGTRVAAIDRSARHVRLEDGRRLEYRGLALATGAR
VRRLPVAGDELDGVLGLRSLDDARRIRVALDRAARVVVIGGGYIGLEVAAAARKRGLEVT
ILEAADRLLARSATPFLAAFYADLHRSQGALVELGAKVVALDGQGGRVTAVRTADGRSHP
ADLVVVGVGIVPDTALAEGCGLACDGGILVDDSARTDDPAIVAVGDCTARRTGTGTPLRL
ESVQNAVEQGRSAAAALLGRERPFTAAPWFWSDQYDVKLQIVGLSADHDRMVLRGSPEDR
RFSAFYFRRDALVAIDSINRPADHMAGRKLLDHKTMITPEQAADESLPLASLMRPGR