PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS28565 AZOBR_RS28565 sugar ABC transporter ATPase (602 amino acids)

SeqID: AZOBR_RS28565 AZOBR_RS28565 sugar ABC transporter ATPase
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6166548: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS28565 AZOBR_RS28565 sugar ABC transporter ATPase
MDASVLRPAARRFALLRAAPALGIGAALVALALTLSNDFYLYVAFMAGVYYICASGMNVL
AGYAGQKSLGQAGLFAAGAYTVALLTTRLELPPALALAAAPLVAAAVGVLIALPSLRVKG
PSLALVTLAFGLVVEKLVTEWTDLFGGAQGIYGIAPLTLGDEPFALKHWVVLVIVLGVAV
HLALSHLLNGRFGRALLALQSDEIAAECAGISVYRYKTLAFVLAAALCGLGGALVAQQNQ
YFNSDFVTFHLSVFILLLVLLGGAGNIYGPIAGAAILTMTEVFLAQWPSVQHFIYGAMLL
FALYLMPTGVAGAIARVLPRRMAVLDGVETPPLTAMQRGRAEPSAGPLLEVTDVSKAFGG
VVTADKVGLRLHAHRIHALIGPNGAGKSTLINILTGVISADSGTIRLAGQDITRGTAHAR
AARGIARTFQNLRLFGSMTVLDNVLIGAHARIGVTGREEDAVAKAKAVLDFVGLGEHAGA
LAGSLPYGLQRRVELARALAGDPVLLLLDEPAAGLNPRETAELGQLIKRIGQLGVAVLMV
EHDMGLVMRISDEIVVLDRGVVIAEGAPRDIQTNPRVIEAYLGREDSPAPDGPESDKEER
PC