PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS29400 FitnessBrowser__azobra:AZOBR_RS29400 (279 amino acids)

SeqID: AZOBR_RS29400 FitnessBrowser__azobra:AZOBR_RS29400
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [7 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3915972: Putative aliphatic sulfonates transport permease protein ssuC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS29400 FitnessBrowser__azobra:AZOBR_RS29400
MEANTKAHAAAPPFMQRAPRRAVSPRILTDRSFRAAMGLTAFFAVWQALTSLGVIDAFLL
PSPIAVAGALWDMALDGSLWVHLGASLQRVAVGFALACVVGMALGLMCGWWRGVADFVRP
VVEALRPIPPLAWIPITILWFGLGDAASYFLVFLGAVFPAFVATYTAVRGLDRNQMNAAL
CLGATPWQLFTDVLIPASLPIILPGLRIALGVGWMCVVTAELIAAQTGLGYLIQQSRMLF
QINNVVAGMVAIGLVGFAMSAVLERIERRVNAWAPSERN