PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS29700 FitnessBrowser__azobra:AZOBR_RS29700 (162 amino acids)

SeqID: AZOBR_RS29700 FitnessBrowser__azobra:AZOBR_RS29700
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597078: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS29700 FitnessBrowser__azobra:AZOBR_RS29700
MSAHAKTISLTVNGTRVEASVPPRQHLGDFLRERELLTGTHLGCEHGVCGACTILIDGEP
ARSCITFAVACDGRSVTTVEGLDDDPVATELREAFSAEHGLQCGFCTPGMLVAARDVVLR
RPDADNPAIRTAMSGNLCRCTGYVGIVNAIRRVIDARNTNAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory