Running PSORTb v3.0 on AZOBR_RS29850 FitnessBrowser__azobra:AZOBR_RS29850 (211 amino acids)
SeqID: AZOBR_RS29850 FitnessBrowser__azobra:AZOBR_RS29850 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 584746: KHG/KDPG aldolase] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Cytoplasmic 9.26 Periplasmic 0.48 CytoplasmicMembrane 0.24 Extracellular 0.01 OuterMembrane 0.01 Final Prediction: Cytoplasmic 9.26 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>AZOBR_RS29850 FitnessBrowser__azobra:AZOBR_RS29850 MTHPRLEPSLSGPRIVPVLVLDEPDTAVALAEALVAGGLTTLEVTLRTPAALACAEAIAA RVPGALVGLGTLIRPEQFAQARDAGARFVVSPGLTDRLAEAAKTAGLPYLPGIATVAEAL IAMEHGFRELKFFPAMLNGGAPALRGMAPLMPEIRFCPTGGLKAEHVKEILSLPNVFALG GTWLTPADAVKERRWSEIERLAREASALAQG
Lawrence Berkeley National Laboratory