PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS29985 FitnessBrowser__azobra:AZOBR_RS29985 (584 amino acids)

SeqID: AZOBR_RS29985 FitnessBrowser__azobra:AZOBR_RS29985
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130693: Pyruvate dehydrogenase [cytochrome]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS29985 FitnessBrowser__azobra:AZOBR_RS29985
MASTASDILVDVLVDWGVDTIFGMPGDGINGIVEALRRRQDEIRFIQVRHEEAAAFAACG
YAKFTGRLGVCIATSGPGGLHLLNGLYDAKLDHQPVLAITGLQYHDLVGTYTQQDVELDK
VFQDVALYNQRVMGAAHVRNIANLACRTALAHRGVSHITIPVDLQEQGIGADMRAPRNVK
GHNTALFAPQLPVPSEAQTRRAVEILDAGKRVVILAGQGALKATDQLERLADKLGAVIVK
ALLGKAAVPDDSPFTTGQVGLLGTAPSQEALETCDTLLIAGSTFPYIEYYPKPGQARAIQ
IDIDAARIGLRYPVEAGLVGDCGLALDILTERVRRHEDRSFLKTAQAGKAEWMKLMEERG
TRPDLPMKPQVVAWELGKRLSDTAIVACDSGTIATWWARQIPARRGQMHSLSGNLATMAP
GVPYAIAAQLAHPGRQVVAYVGDGGFSMLMADFATAVKYKLPIKVIISNNNSLGQIKWEQ
IAMLGNPEYVCDLQPIDFAKVAEACGGRGFTITDPKDCGATLDAALAHPGPVVVDCLVDT
NEPPMPPKVQAKQALHFTEALARGTPDALKIAATVFKGRAREVI