PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS30120 FitnessBrowser__azobra:AZOBR_RS30120 (427 amino acids)

SeqID: AZOBR_RS30120 FitnessBrowser__azobra:AZOBR_RS30120
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS30120 FitnessBrowser__azobra:AZOBR_RS30120
MELTILAVTFFGFLVLGIPVAFAIGLSALCTILYEGLPVAVIFQQMMSGMNVFSFLAIPF
FVFSGELMLHGGVADKIVATAKNMVGHIRGGLGMSNVVACTLFGGVAGSPVADVSAMGAV
MIPMMKREGYHADYAVNVTTHAALVGALMPTSHNMIIYALAAGGKASIGALIAAGIVPAL
LLMVCNLGAAYYVAVKRGYPPGTFPGWSILGRSFAAAAPGLLIVVIILAGITSGVFTATE
SASIAVIYALLLTTFVYRTLTWDHFLAAAAKTVKTTGVVLLLIGVSTMFQYIMGLYQVAE
ITGELMAGISTNPLVIFLLINIILFLLGTFMDMASTILICTPIFLPIAMQYGMDPVQFGI
VMLINCALGLNTPPVGTTQFIGCAIGEVSVGQVMRSITPFYGALFVTLLLVTYVPTFSLW
LPHMLMR