PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS30440 FitnessBrowser__azobra:AZOBR_RS30440 (682 amino acids)

SeqID: AZOBR_RS30440 FitnessBrowser__azobra:AZOBR_RS30440
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168476: Oligopeptide transport ATP-binding protein appF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS30440 FitnessBrowser__azobra:AZOBR_RS30440
LLEVRNLTINYASPRGTLRAASDVSFAIRPGEVMGLVGESGSGKSTVAMAILDLLGEAGR
IDGGEILFEGTDLRRLSAAHRRSLRGDRIAAVFQDPFTSLNPALTVGRQIAEPLVQHKGF
TPRQAAPRVEELLAEVGIREPRRIAQSYPHQLSGGMQQRVLIATALGCDPKLLILDEPTT
ALDVTVEARIIELLAGLCESHHLSALFVSHNLGIVNRICNSVCVLYGSEVVETGRTRDVL
ARPVHPYTKGLVAALPRITTDRRHRLSSIPGTVSKLSGASESCVFAPRCPFAEETCRRLP
QALRGDAAGNSVRCWKAEALAGTPWPEESTASRPQAAPPARTAPLVQVDALRKVFGERRS
ILPWLRRDGTVAVDDVSFTIQRGEVLGVVGESGSGKSTIGRSLLALIEPTAGTVLFDGAD
FVKQAKEGNRDLRRRAQLVFQNSAASLNPRKTVGAAMERPLVLAGRQGEAERREMIAALL
TRVGLPAAYADRYPHELSGGERQRVNIARALATDPEFVVCDEAVSALDVSVQANILNLLA
DLRDELGLSYLFITHDIAVVSHIADRVLVVYGGTICEEGPIGRVLRPPYHPYTEALLSAV
PRLSGAEDGPEPERILLEDSTAPPGGGGCAFRGRCPRKLGAICDERAPPVQTATDGHRIA
CHIPLAELAERASVFPELAALH