PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS30840 FitnessBrowser__azobra:AZOBR_RS30840 (323 amino acids)

SeqID: AZOBR_RS30840 FitnessBrowser__azobra:AZOBR_RS30840
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598757: 1-phosphofructokinase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS30840 FitnessBrowser__azobra:AZOBR_RS30840
MSAPSTPRPGVVTVTLNAAIDQTLDVPGFAAGAVNRAVAETRTAGGKGINVAAFLAGASL
AGGATPVTATGFLGEENTAVFDALFRRRGIRDRCLRLAGRSRVNIKLVDREGHSVTDINL
PGLHVPAESWRGLLTVVDDLAVTNRTFVLSGSVPAGVPDTAYTEMVTALHRRGAFVVVDA
SGPPLRHAVAARPDMVKPNAAELAELLGRPLKDRAEVVRAARELSESGIALVVVSLGAEG
AVFVEGGRALLAMPPPVEVASTVGAGDAMVAGVVAARLEGMGLEDCARRGTAFAAGTLSR
LGPELPPPERLAELMRAVRVEEL