PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS30960 FitnessBrowser__azobra:AZOBR_RS30960 (250 amino acids)

SeqID: AZOBR_RS30960 FitnessBrowser__azobra:AZOBR_RS30960
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 19858099: Thiazole biosynthesis protein thiG]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS30960 FitnessBrowser__azobra:AZOBR_RS30960
IAGREFRSRLFLGTAGYPNQQVMLDALEASGSELVTLAIRRISLDGYSESLVDVIGDRAG
LLPNTAGCLTAKEAVLTAQLAREALGVDWIKLEVIGDRELLYPDVEELLRATEELVADGF
TVLPYCNDDPVTCRKLADLGAAAVMPLGAFIGSGLGIRNPHAIETICARSPVPVVLDAGI
GTASDAALAMELGCAAVLLNTAVSKARDPVRMAAAMRDAVAAGRAARLAGRMPKRAFAEA
SSPQLGLIGT