PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS31155 AZOBR_RS31155 AMP-dependent synthetase (567 amino acids)

SeqID: AZOBR_RS31155 AZOBR_RS31155 AMP-dependent synthetase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506182: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS31155 AZOBR_RS31155 AMP-dependent synthetase
MMGDAARTLPDQSWTLGYPPDVDWNAPIPVKPLTALLEDAAARFAERPFLDFMGKRSTYA
EVARMVDRAARGFQAIGVSKGVRVGLFLPNTPYFVICYFAILKAGGTVVNFNPLYAEREL
HHQITDSGVELMVTLDLKVLYGKMARMLAESGLKRLVICPMADILPFPKNWLFPIVKRAE
VARIPADDRHLSFRRLVANDGAPKPVAIDPTEDVAVLQYTGGTTGVPKGAMLTHANLFAN
TEQCSLWFVGARQGEERMLGVLPFFHVFAMTVVMNFSIRIGAEIVMLPRFELDQVMETIH
ARKPTLFPAVPTIYTAINHHRHLEKYDLSSIRYCLSGGAPLPVEVKEAFERNTGCVLVEG
YGLSESSPVATANPITGLNKAGSIGLPLPGTLIEIVSLEEPRRVLPVGEKGEVCIRGPQV
MKGYWNKPSETALTLVDGRLHTGDVGYMDEDGYTHIVDRIKDMILCSGFNVYPRNVEEAI
YLHPAVAECVVAGLPDEYRGQTVKAYIRVDDGKTLTREELIGFLKDKLSPIEMPKAIEFR
GELPKTMIGKLSRKALLDEEAERRKGS