PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS31205 FitnessBrowser__azobra:AZOBR_RS31205 (354 amino acids)

SeqID: AZOBR_RS31205 FitnessBrowser__azobra:AZOBR_RS31205
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 732297: Inner membrane ABC transporter permease protein ytfT]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS31205 FitnessBrowser__azobra:AZOBR_RS31205
MTRSAPGPSRNLPQYGALAAVLLANWLLFPDFFSIRLQDGRLFGSLIDVLNRGAPVALLA
IGMTMVIATRGVDLSVGAVMAISGAVAATLTQAGWGLTPVLAASLAAGLLCGLWNGLLVA
VLRIQPIVATLILMVAGRGIAQLVTEGQIVTFTSPGLTFIGSGSFLTVPMPVVITAVLLG
VTALLVRMTALGLMIEAVGVSRLSSAGAGVNTPVVLVAVYVWCGLCAAVAGLVVAADIRG
ADANNAGLWLELDAILAVVVGGTSLLGGRFGLLLSVVGALTIQAMNTGILLSGFKPEFNL
IVKAGVLMVVLLLQSPTLTLFLPRPAGHRPAQPPVRPPTPPRAKPESPSPSAGA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory