PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS31215 FitnessBrowser__azobra:AZOBR_RS31215 (321 amino acids)

SeqID: AZOBR_RS31215 FitnessBrowser__azobra:AZOBR_RS31215
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 732294: ABC transporter periplasmic-binding protein ytfQ precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS31215 FitnessBrowser__azobra:AZOBR_RS31215
MSRTWLISAAAAAALLIGLGGAQAADKKLVVGFSQIGSESGWRAAETKTAKAEAEKRGID
LKISDAQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWDSVLKEAKEAKIPVVLLDRQIE
TRDPGLYMTAVTSDTVLEGRVAGEWLAKQTGGTCNVVELQGTVGSSPAINRKKGFDEVVA
KTPGMKIVRTQSGDFTRAKGKEVMESFIKAENGGKGICAVYAHNDDMAVGAIQAIKEAGL
KPGKDILVVSIDGVPDIFKAMAEGEANATVELTPNMAGPAFDALVAFKKDGKAPPKWIQT
ESALFTPDTAKAEYERRKDAY