PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS31240 FitnessBrowser__azobra:AZOBR_RS31240 (358 amino acids)

SeqID: AZOBR_RS31240 FitnessBrowser__azobra:AZOBR_RS31240
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 1705847: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS31240 FitnessBrowser__azobra:AZOBR_RS31240
MSSSFTTTLAGMAVGVLALTVAAAPTLAQDKPTVGIAMPTKSSARWIDDGNNMVKQFQAK
GYKTDLQYAEDDIPNQLAQIETMVAKNSKVLVIAAIDGTTLTDVLQQAKDRGVKVIAYDR
LIRGSENVDYYATFDNFQVGVLQGSYIVDALGLKDGKGPFNIELFGGSPDDNNAYFFYNG
AMSVLQPHIDSGKLKVGSGQVGMDKVSTLRWDGATAQARMDNLLSAFYGNRRVDAVLSPY
DGISIGIISSLKGVGYGSPSQPMPVVTGQDAEVPSIKSILAGEQRATVFKDTRELARVTV
EMVDAVLGGGTPPVNDTKTYDNGKKVVPAYLLKPVSVDASNWKSTLVGSGYYTEAQFK