PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS31370 FitnessBrowser__azobra:AZOBR_RS31370 (398 amino acids)

SeqID: AZOBR_RS31370 FitnessBrowser__azobra:AZOBR_RS31370
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS31370 FitnessBrowser__azobra:AZOBR_RS31370
MEQTWRWFGPDDVIRLNHIRQTGATGIVTALHQIPYGVVWSVEEIEERKAMIAADPSLGL
RWSVVESLPVHESIKIGEGDLAPLFDNYRQSLRNLAACGVTTVCYNFMPILDWTRTDLAA
PVPGGGTSLRFNAHEHAAFDVFMLERPGAEDDHSPEVLARARAWFDKASEDDKKTLLANI
MAGLPGAFDRYDIPGLRKMLDRYKDMSHGALRETLARFLREVIPTAEEVGIRMCIHPDDP
PRPLMGLPRIVSNEDDLDFIVNVIDSEANGITFCTGSLGAGAKNDVPAMIKRFAPKVTFA
HLRNVKKDPDGSFQEAEHLGGDVDMVSVVTTLLEEQKRRKDAGNPNWRIPFRPDHGHELL
DDVGKKTHPGYPAIGRLRGLAEIRGVMTAVASMRQLPV