PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS33830 FitnessBrowser__azobra:AZOBR_RS33830 (481 amino acids)

SeqID: AZOBR_RS33830 FitnessBrowser__azobra:AZOBR_RS33830
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS33830 FitnessBrowser__azobra:AZOBR_RS33830
MGSKASASTVTPVILSGGAGSRLWPLSRASYPKQFLPLASEQTMIQETALRVSSDRFAAP
LVICNEEHRFIVAEQLRAASVSPAEIILEPVGRNTAPAVCIAALALLESGEDRLMLVMPS
DHVIARSDRFLEAVEQAAVAAAAGSLVTFGITPVAPETGYGYIKAGGPLGTGDNIRVVER
FVEKPDLATAQTYLADGRYLWNSGIFLFSAAAYVAELEKSNPAIVEACRQARSSAARDLT
FCRLEKEAFAASPSDSVDYAVMEKTDQAAVVAVDMGWNDVGAWSALWDIAEKDESGNVVH
GDVVLHNARNSYVRSEEQLVAVAGLDDVVVIATDDAVLVADRKHVQDVKLIVERLKAEKR
DEHALHTTVYRPWGSYRGIDIGDRFQVKRITVKPGERLSLQMHHHRAEHWIVVQGTALVT
CGEKQELLFENQSVYIPMGTTHRLENPGKVPLHLIEVQSGSYLGEDDIVRFEDGYGRVAG
K

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory