PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1140 FitnessBrowser__acidovorax_3H11:Ac3H11_1140 (980 amino acids)

SeqID: Ac3H11_1140 FitnessBrowser__acidovorax_3H11:Ac3H11_1140
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1140 FitnessBrowser__acidovorax_3H11:Ac3H11_1140
MATSRKSSPQPARHAFANTLKSFRTASGKDGQFYSLPALAKQFPEIKRLPVSIRIVLESV
LRNCDGRKVTPEHVEQLARWAPNAERKDEIPFVVSRVVLQDFTGVPLLADLAAMRSVAAK
LGKNPKKIEPLVPVDLVVDHSIMIDHYGKKNSLDLNMKLEFQRNRERYEFMKWGMQAFDT
FGVVPPGFGIVHQVNLEYLARGVHKRKDGVFYPDTLVGTDSHTTMINGIGVVGWGVGGIE
AEAAMLGQPVYFLTPDVVGFEMTGRLREGVTATDLVLTVTELLRKHKVVGKFVEFFGEGT
RTLALPDRATIGNMAPEYGATMGFFPVDEKTIDYFQGTGRTKAEIEAFEAYFKAQGLFGV
PLAGEVDYSQVVTLDLGSVTPSLAGPKRPQDRIELGQVSRQFADLFSQPAAHNGFNRPAE
LLHTRFHIHRAAEVVADVTPDGKPTPAGAPRSVVEMEANKPALATAHAEARSATLPARGA
DPTVGNGDVLIAAITSCTNTSNPSVLLAAGLLAKKAVEAGLKVQPHIKTSLAPGSRIVTE
YLSETGLLPYLEKLGFSIAGYGCTTCIGNAGDLTPELNEAITQNDLVCAAVLSGNRNFEA
RIHPNLKANFLASPPLVVAYAIAGTVLKDLMTEPVGQGKGGKDIYLGDIWPSSDEVHALL
KFAMKGKAFRDNYAKVATDPGKLWEKIQGVSGTAYTWPASTYIAEPPFFAQFALEKGANK
ASGTRGEGQKDAQLPSVMGARIMALFGDSITTDHISPAGSIKESSPAGQWLLQHGVQKAD
FNSYGARRGNHDVMVRGTFANVRIKNLMIPPTADGSREEGGVTVFQNEGALQGEKMFIFD
AAMQYMAQGTPTVVFAGEEYGTGSSRDWAAKGTQLLGIKAVVARSFERIHRSNLVGMGVL
PLQFKAGDSWETLGLTGNEVIDVLPDPALTPQSDARLVIRRADGTVREVVVTLRIDTPIE
VDYYRAGGILPFVLRQLLEG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory