PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1196 FitnessBrowser__acidovorax_3H11:Ac3H11_1196 (1191 amino acids)

SeqID: Ac3H11_1196 FitnessBrowser__acidovorax_3H11:Ac3H11_1196
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            2.00
    Cytoplasmic            2.00
    CytoplasmicMembrane    2.00
    Extracellular          2.00
    OuterMembrane          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1196 FitnessBrowser__acidovorax_3H11:Ac3H11_1196
MNAPLPESVRKALETVTLDDKYSLDHGRAFMSGVQALVRLPMLQRQRDAVAGLNTAGFIS
GYRGSPLGTYDQALWAAKKHLAANNIVFQPGVNEELGATAVWGTQQLDLYPQSKKFDGVF
GIWYGKGPGVDRCSDVFKHANMAGTAKHGGVIAIAGDDHISKSSTAAHQSDHIFKACGTP
VFFPSSVQEILDMGLHAFAMSRFSGVWSGMKTIQEVVESSSSINIDPDRVKIVMPEDFVM
PPGGLHIRWPDAPLEQEARLMDYKWYAALAYIRANKLNYNVIEGKNDRFGIIASGKAYND
TRQALVDLGLDDDTCRQLGIRVHKVNVVWPLEATITRDFAQGLQEILVVEEKRQVIEYQL
KEELYNWRADVRPNVLGKFDEPEGDATGGEWSMPNPSQNWLLRAKADLTPAIIAKAIAKR
LKKLGVSSDIIARMDSRIAVIEASERGMAELKVDTGERAPWFCSGCPHNTSTRVPEGSRA
VAGIGCHYMANWMPDRKTSTFTQMGGEGVTWVGQAPFTTDAHVFANLGDGTYFHSGLLAI
RQSIAAGTSITYKVLYNDAVAMTGGQTVGERPEGHSVLQIMNSLKSEGVVKLIIVTDEPQ
KYDGVALAAGVTVHHRDELDTLQRQFREIKGCTVIIYDQTCATEKRRRRKRGTLATPDKT
VVINDLVCEGCGDCSTKSNCLSVEPVETEFGRKRRINQSTCNKDYSCVNGFCPSFVTVEG
GKLKKPKKEKKGDLSALPSIPEPVLPVAEAAWGIVVGGVGGTGVITIGSLLGMAAHLDGK
GVITQDAGGLAQKGGATWSHIQIANRPEAIYTTKVDTAKADLVIGCDSIVAAHKYTLTVM
QPGRTFVALNTHSTPTAAFVTNPDWQFPGANCDSAIAAAVGAGGVGSFDAEQVATQLLGD
SIYTNPLMLGYAWQKGRVPLTLASLMRAMELNGVQVDNNKAAFEWGRRCAHDLASVQALF
QAAQVIQFVKKPSLTEMIAKRVEFLTGYQNAAYAAEYHAFVEKVKATESRLDVGTRLSEA
VARYLFKLMAYKDEYEVARLHTDKAFTDKIVNMFEGDYKLVHHLAPPMTAKKNDKGELVK
QPFGPWMRSAFGLLAKMKGLRGTALDVFGKTEERRMERALIVEYRACIDELLATLNADNL
ALAVEIARIPEEIRGYGHVKERHLKAARPKWDGLMAQWRSGKAAPGQRQAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory