PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1228 TRAP-type C4-dicarboxylate transport system, large permease component (426 amino acids)

SeqID: Ac3H11_1228 TRAP-type C4-dicarboxylate transport system, large permease component
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [13 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1228 TRAP-type C4-dicarboxylate transport system, large permease component
MTVTIFLGSLLLAMAIGIPIAFALLISGVALMWHLDLFDAQILAQNVINGADSFPLLAVP
FFMLAGEIMNVGGLSKRIVKLALTLVGHVPGGLGYVAIMAAVILAAVSGSAVADAAALAS
LLLPMMVAAGHNKERSAGLIASAGIIAPVIPPSIGFVIFGVAANVSISKLFLAGIVPGIL
LGVALALTWWWLVRREDVAPPKRATRAELTVALREAVWALGLPIIILVGLRMGVFTPTEA
AVVAAVYALFVSMVVYRELSWHQLADIFRASARTSAVVMFLVAAAMVSAWLITVADLPSK
VIGMLEPFMGNPTLLLIAIMLLVMVVGTAMDMTPTILILTPVLMPVVKAAGIDPVYFGVL
FIINNAIGLITPPVGTVLNVVAGVGRMSMSQVTRGVTPFMLAQLAVMFLLVLFPSIVMVP
LRWLSG