PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1311 FitnessBrowser__acidovorax_3H11:Ac3H11_1311 (267 amino acids)

SeqID: Ac3H11_1311 FitnessBrowser__acidovorax_3H11:Ac3H11_1311
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 128372: Lipoprotein 28 precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1311 FitnessBrowser__acidovorax_3H11:Ac3H11_1311
VNNNKRLLLQSALALAAAAAFSTGAIAQDKPLKIGVTGGPHAQIFEQVKKVAEKDGLKIQ
IVEFSDYVQPNAALSAGDLDANSYQHKPYLDAQVADRGYKLVSVGYTVNFPIGLYSKKVK
KLEDLKEGAKFGIPNDPTNGGRVLLVLQDKGLIKLRDGAGLKATPLDVVSNPKKLKFVEL
DAAQLPRSLDDLDASAINTNFALSAGLNPGKDAIAQENAKSPYVNLIAVREADKDKPWVA
KLVKAYHSEEVKKFIQTEFKGSVLPGF