PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1341 FitnessBrowser__acidovorax_3H11:Ac3H11_1341 (442 amino acids)

SeqID: Ac3H11_1341 FitnessBrowser__acidovorax_3H11:Ac3H11_1341
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2500947: Cystathionine gamma-synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1341 FitnessBrowser__acidovorax_3H11:Ac3H11_1341
MSSNPPSGADRAFGFGTRAIHAGAQPDPVTGARATPIHQTTSFVFDNAEHASSLFNLQTF
GNVYSRISNPTVAVFEERIASLENGRAALACASGMAAQMAALLAILKTGDHIVAASTLYG
GTVGQLGVGFARLGIETTFVDPADPENFARAMRPNTRAVYGETIGNPLVNVLDIAAVAEV
AHAHGVPLIIDNTVASPYLCNPLALGADIVVHSATKYIGGHGTTMGGVVVEGGQFPWDNG
KFPEMVEPSRAYHGVKFYETFGDFGYTMKARMEVNRTFGGVLSPMNAWQLLQGAETLHLR
MREHCRNALAVAKFLQSHPQVAWVNYPGLSDSPYFDLAQKQFRAVDGAPGASGILTFGVK
GGATAGEKFIDACEFLSHLANIGDAKTLVIHPASTTHRQLNEEELARAGVSADMVRLSVG
IEDLDDILWDIDQALGRTGGSA