PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1447 FitnessBrowser__acidovorax_3H11:Ac3H11_1447 (452 amino acids)

SeqID: Ac3H11_1447 FitnessBrowser__acidovorax_3H11:Ac3H11_1447
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2499313: NADH-quinone oxidoreductase subunit 1 (NADH dehydrogenase I chain 1) (NDH-1 subunit 1)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1447 FitnessBrowser__acidovorax_3H11:Ac3H11_1447
MTTAAQILSQFQATGVQTCFHDRHINPQIVAGLDGTNWSIKDYEARGGYAALRKILGTDG
GEPLTQDQVIATVKESGLRGRGGAGFPTGLKWSFMPRSFPGQKYLVCNSDEGEPGTCKDR
DILQFNPHIVIEGMIIAAYAMGISVGYNYIHGEIFQTYDRFEAALEEARAAGYLGDKILG
SNFSFQLHAAHGFGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETF
AAVPWIIRNGGAAYLECGKPNNGGTKIFSVSGDVEKPGNYEVPLGTPFAKLLELAGGVRK
GRQLKAVIPGGSSAPVLPASIIMECTMDYDSIAKAGSMLGSGAVIVMDDSRSMVESLLRL
SYFYSHESCGQCTPCREGTGWMWRVIDRIQHGQGRDGDLNLLNSVADNIQGRTICALGDA
AAMPVRAMIKHFRPEFEALIRQEKTPQASTSA