PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1482 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) (274 amino acids)

SeqID: Ac3H11_1482 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599323: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1482 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4)
MMQIPNNRFRNALREGQPQIGLWVGLADANAAEALAGCGFDWLLLDGEHAPNDVRSVLDQ
LRAVAPYPAHPVVRPVQADVALVKQYLDVGAQTLLIPMVDTPEQAALMVRAMRYAPEGIR
GMGAALARASRWNQVEDYLNCANGEMCLLVQAETPLAMQNLQAIAATDGVDGVFFGPADL
SASMGYRGQASHPAVQRAILEGIATVRAVGKAPGILMADRQLAQSYLDAGALFVAVGVDT
TLLVRSATELARSFGRNSAPVPTRVPLAGGGNPY