PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1578 FitnessBrowser__acidovorax_3H11:Ac3H11_1578 (236 amino acids)

SeqID: Ac3H11_1578 FitnessBrowser__acidovorax_3H11:Ac3H11_1578
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 130017: Acetoacetyl-CoA reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1578 FitnessBrowser__acidovorax_3H11:Ac3H11_1578
VTGASRGIGAAIALELAVRGYQVVGTATTDEGAARISQALAAYPGCRGANLNVNDVAAVE
ALMDSIVKQQGGLHVLVNNAGITRDTLAMRMKDDDWDAVMDTNLKAVFRVSRAAIRPMMK
QRFGRIISITSVVGASGNPGQANYAAAKAGVAGMTRALARELGSRSITVNCVAPGFIETD
MTSVLPEDQQKALNAQIPLGHMGKPADVAHAVAYLASREAGYVTGQELHVNGGMYM