PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_1843 FitnessBrowser__acidovorax_3H11:Ac3H11_1843 (560 amino acids)

SeqID: Ac3H11_1843 FitnessBrowser__acidovorax_3H11:Ac3H11_1843
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_1843 FitnessBrowser__acidovorax_3H11:Ac3H11_1843
MEKIWLKSYPPGVPHDVKPEQYRSVAHLLEESFRKHAKSPFSVCMDQWMTYGELERRSAA
LGAYLQSLGLEPGARVAIMLPNIPQFGVTMAAVLRAGYTCVNVNPLYTARELEHQLKDSG
ATAIVILENFAHTLADVIDHTAVKHVVMASMGDLLGFWFGQWITFAVRHLAKMVPAYDLP
LTGGRKVVTFKKALSVGEHKSLAPSQATLDSIAFLQYTGGTTGLSKGAVLTHRNIVAATL
QAEAWFTPALSKVGDLSKANSIAALPLYHIFALTLCLLAIRQGSSLTLIPNPRDIPKFVA
ELKKRPFHMLPAVNTLFNALLQNPQFKTLDFSHLCVSQAGGMAASEGTAKQWQKVTGSTM
IEGWGMSETCAIGTNNPVISTTFSGNIGLPLPGIDIAIKDDDGNSLPQGESGEICIRGPN
VMVGYYNQPEENAKAFTPDGFMRTGDIGIMDPQGYTRIIDRKKDMILVSGFNVFPNELEQ
VISLCPGVVECAAIGVPDEKQGEAIKVFIIKNDPALTEDEVANYCHQNLTGYKRPKYIEF
RDELPKSNVGKILRRELRKA