PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_2073 TRAP-type C4-dicarboxylate transport system, periplasmic component (328 amino acids)

SeqID: Ac3H11_2073 TRAP-type C4-dicarboxylate transport system, periplasmic component
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 586718: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_2073 TRAP-type C4-dicarboxylate transport system, periplasmic component
MQRKTFTRTLLAAAALAVALPGLAQAQAMKLTLGHGAAPGNPRHEAAVKFAETLKAKTAG
RIEVQVAPSAQLGDDAAMVTAVRTGALDMTANSQGAVSVAVPEYAAYGMPFMFSTPAQAF
KLLDGPLGQELAQKSADKGMVVLGYWDNGIRHMTNSKRPITKVEDMKGLKMRTPPDAVLV
DIMQALGAEAQQIKFAELYVALQQGVVDGQENPLVNIHASKLYEVQKHLALTSHMFQMTP
FLMSKRTWDRLSDADRKAVTEAAAEATALQRKMSQEADDKLLDDLKAKGVQVTTVDKAAF
AKATAAVDAKWLTTPIGPYLKKVIAAAR