PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_2278 FitnessBrowser__acidovorax_3H11:Ac3H11_2278 (722 amino acids)

SeqID: Ac3H11_2278 FitnessBrowser__acidovorax_3H11:Ac3H11_2278
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_2278 FitnessBrowser__acidovorax_3H11:Ac3H11_2278
MSDKPTNNAPEFAAASLEAWAKAAAKSAPGGDVSALNWVTPDGITVKPLYTAEDTASLPY
ANTLPGFEPYLRGPQATMYAVRPWTIRQYAGFSTAEESNAFYRKALAAGGQGVSVAFDLA
THRGYDSDHPRVTGDVGKAGVAIDSVEDMKILFDQIPLDKVSVSMTMNGAVLPVLAGYVV
AAEEQGVSQDKLSGTIQNDILKEFMVRNTYIYPPKPSMRIIGDIIGYTAKNMPKFNSISI
SGYHMQEAGANQALELAFTLADGKEYVKTAMASGLDVDEFAGRLSFFWAIGMNFYLEVAK
MRAARLLWCRIMKETGAKNPKSLMLRTHCQTSGWSLTEQDPYNNVVRTTIEAMAAVFGGT
QSLHTNALDEAIALPTEFSARIARNTQLIIQEETHITNVIDPWAGSYMMEKLTQDMMDAA
WKIIEEVEAMGGMTQAVDSGWAKLKIEAAAAEKQARIDSGKDVIVGVNKYKLAKEDPVDI
LQIDNMKVRDGQIARLEKIRATRDAAKVQAALDALTAAAESGEGNLLELSINAVRLRATV
GEVSDALEKVFGRHRADTQKVTGVYAAAYDSAEGWDKLKTEINAFAEEQGRRPRVMIAKL
GQDGHDRGAKVVATAFADLGFDVDMGPLFQTPEECARQAIENDVHAVGVSTLAAGHKTLV
PAIIQSLRDQGADDIIVFVGGVIPAQDYDFLYESGVKGVYGPGTPIPASAKDVLEQIRKA
VA