PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_2337 FitnessBrowser__acidovorax_3H11:Ac3H11_2337 (391 amino acids)

SeqID: Ac3H11_2337 FitnessBrowser__acidovorax_3H11:Ac3H11_2337
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599399: periplasmic gluconolactonase, PpgL[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    OuterMembrane          0.00
    CytoplasmicMembrane    0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_2337 FitnessBrowser__acidovorax_3H11:Ac3H11_2337
MSVAPGPQAVHHQKKENRMTAVLHTRRPAGPHARLARLAPLAALALALAAPGAGAATWVY
VSNADSQDVSVFELDRNAGALKPVDTTALGGMAMPMAVSPDKKVLYVALRSQPFRVVSLA
IDPASGKLRKLGEAPLADSMANIDTDATGRWLFAASYPGHKITVNSIGKDGAVGAVQQLI
PTAPHAHAIHADAANRHVLATSLGGDNLSAWRFDAETGKLTAHEPALTTVTPEKSGPRHF
VWDKAQRSLYLLNELDASVHVMAYDKERGTLRAVQRATTLPAGFAGKPWAADIHLSPDGR
TLYASERTSSTLSSFRVDAATGQLQPLGQVPTEKTPRGFAVDSSGRFLIAAGQESHHVAL
HPIDPATGIPGAATRVPAGKNPNWVEIVDLP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory