PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_2558 FitnessBrowser__acidovorax_3H11:Ac3H11_2558 (512 amino acids)

SeqID: Ac3H11_2558 FitnessBrowser__acidovorax_3H11:Ac3H11_2558
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.54
    CytoplasmicMembrane    0.39
    Cytoplasmic            0.06
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            9.54

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_2558 FitnessBrowser__acidovorax_3H11:Ac3H11_2558
MTHNASSLTLHPGRVTLAELRRIHAGPVQLVLDASARAGLQKSLATVQRIVDEDQVVYGI
NTGFGKLASTKIAHERLAELQRNLVLSHSVGTGDPLPDDVVRLILATKAVSLARGHSGVR
PELVDALLALANANVLPVIPAKGSVGASGDLAPLAHMACVLIGEGQAKVDGKVVPGAEAM
RSIGLQPFVLGPKEGLALLNGTQVSTALALAGLFGAESVFSAALVAGCLSLEAIKGSVKP
FDARIHEARGQAGQIAVAAAVRALLDGSAIDPSHPHCGRVQDPYSIRCVPQVMGACLDNL
HHAARVLTIEANAASDNPLVFDNGDVISGGNFHAEPVAFVADIIALAVAEIGAISERRLS
LLLDPGLSGLPAFLIRDSGVNSGFMIAQVTAAALAAENQCLANPSSVTSLPTSANQEDHV
SMATYGARRLGDMVRNAAVMVGIEAMAAAQGMEFDRSLKSSPLIEAQFAAIRERVAYLEQ
DRYLAPDIEAMRAWAQQSTWPAALTQCLPSFA