PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_3135 FitnessBrowser__acidovorax_3H11:Ac3H11_3135 (394 amino acids)

SeqID: Ac3H11_3135 FitnessBrowser__acidovorax_3H11:Ac3H11_3135
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599916: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_3135 FitnessBrowser__acidovorax_3H11:Ac3H11_3135
MKFSTRAERIEPFYVMEVAKAAQALAREVAGTREPMIFLNIGEPDFTAPPLVQEAAARAV
HSGATQYTNALGLDALRERISSWYQSRFGVNVPARRIVVTAGASAALQLACLALIESGDE
ILMPDPSYPCNRHFVSAAEGKAVLLPTTAAERYQLSADKVRAAWNEKTRGVLLASPSNPT
GTSIAPDELRRIHDVVRSHDGITMIDEIYLGLSYEEEFGHTALAIDDNIISINSFSKYFN
MTGWRLGWMVVPEAMVPVVERLAQNLFICASTVSQYAALACFEAESIAEYERRRAEFKAR
RDFFIPALEKLGLAVPVKPDGAFYAWADCTQAAQRLGVTGSWDFAFELMRRAHIAVTPGR
DFGTFDPERFIRFSTANSMAQLEESVARLRTLLG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory