PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_370 FitnessBrowser__acidovorax_3H11:Ac3H11_370 (326 amino acids)

SeqID: Ac3H11_370 FitnessBrowser__acidovorax_3H11:Ac3H11_370
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597207: 3-hydroxy-3-methylglutaryl-CoA lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_370 FitnessBrowser__acidovorax_3H11:Ac3H11_370
MSASSTVWQGANRRIHMQEVGLRDGLQMEKAFVPTADKIALCNALSAAGLSKIEVTSFTS
PTAIPALKDAEVVMREITRRPGTVYTALVPNLRGAERAIESRTDELNLVMSVSATHNLAN
LRMTQEQSFAALAQVVALAQGANVAVNVSLSCVFGCPMEGDVAQADVFGWVQRFVDVGVR
GITLCDTTGMAYPTQVHQLTAAARARWPGVEFTLHFHNTRGMGLANVLAAIDAGADRFDA
SLGGLGGCPYAPGASGNVCSEEIVHALALMGYDTGVDLVQLVAAAQQLPAFIGHDIPSQI
AKAGPRLALHPVPADFEAIRERSLSR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory