PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_3922 FitnessBrowser__acidovorax_3H11:Ac3H11_3922 (233 amino acids)

SeqID: Ac3H11_3922 FitnessBrowser__acidovorax_3H11:Ac3H11_3922
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597195: DhcA, dehydrocarnitine CoA transferase, subunit A[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_3922 FitnessBrowser__acidovorax_3H11:Ac3H11_3922
MINKLADSVAQALAGVKDGATVLIGGFGTAGIPGELIDGLIAQGARDLTVVNNNAGNADQ
GLAALLKAGQVRKIICSFPRQVDSYVFDDLYRSGKLELELVPQGNLAERLRAAGAGIGAF
FCPTAHGTELAAGKETREINGKHYVLEYPIHGDVALIKAEKGDRWGNLTYRMSARNFGPV
MATAAKTTIATVHEVVELGALDPEAIVTPGIYVTHVVKIDRTATQAGGFKKSA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory