PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_3953 D-galactarate dehydratase (EC 4.2.1.42) (525 amino acids)

SeqID: Ac3H11_3953 D-galactarate dehydratase (EC 4.2.1.42)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_3953 D-galactarate dehydratase (EC 4.2.1.42)
MNRPALTIRMHPDDNVAIVANDGGLPAGTVLPPGVPGAGITLRDKVPQGHKVALSDMAEG
DVVRRYNVPIGYALKAIPAGSWVHERLLQMPSARALEGLPMATVKPPVLEPLTGYTFEGY
RNADGSVGTRNILAITTTVQCVAGVVANAVRRIKDELLPLYPQVDDVIGLEHTYGCGVAI
DAPDAIIPIRTLRNISLNPNFGGEVMVVSLGCEKLQPDRLLPAGSFPIADERDAALGPET
VCLQADEHVGFMSMLDHIVQSARPHLERLNARRRETIRASELVLGVQCGGSDAFSGVTAN
PAVGFCADLLVRAGATVMFSENTEVRDAVEQLTSRAATPEVAESIVRELGWYDRYLDRGR
VDRAANTTPGNKAGGLSNIAEKAMGSIIKSGTAPISHVLAPGEKLRRDQRGLVYAATPAS
DFICGTLQLAAGMNLHVFTTGRGTPYGLAECPVVKVATRTDLARRWHDLMDINAGKIADG
EASIEELGWEMFHLLLDVASGRKKTWAEQWKLHNALVLFNPAPVT