PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4091 FitnessBrowser__acidovorax_3H11:Ac3H11_4091 (616 amino acids)

SeqID: Ac3H11_4091 FitnessBrowser__acidovorax_3H11:Ac3H11_4091
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 71159292: Dihydrolipoyl dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4091 FitnessBrowser__acidovorax_3H11:Ac3H11_4091
MAIIDIKVPDIGDFAEVAIIEVLVKPGDTIKAEQSLITVESDKASMEIPSSHAGVVKELK
VKLGDKIAEGSVVLTLEVQGAGAAAPAPAAAPAPAVSEQKTASAPVQQAQVAINPVASSF
AGTADLDCDVLVLGGGPGGYSAAFRAADLGLKVVIVERYATLGGVCLNVGCIPSKALLHV
AAVMDEVSHMADLGVDFGAPAVNIDKLRGHKEKVIGKLTGGLAAMAKMRKVTTVRGYGAF
VGANHLEVEETTGTAQEKTGTKKVIAFKRAIIAAGSQAVRLPFMPDDPRVVDSTGALALK
EVPKRMLILGGGIIGLEMGTVYSTLGARLDVVEMMDGLMQGADRDLVKIWQKMNAKRFDN
IMLKTKTVGAKATPEGIEVTFAAAEEGGTAPAPQTYDLVLQAVGRTPNGKKIAADKAGVA
VTDRGFINVDIQMRTNVPHIFAIGDIVGQPMLAHKAVHEAHVAAEVIAGELQGNKELAAA
AFNARVIPSVAYTDPEVAWVGLTEDQAKAQGIKVKKGLFPWTASGRAIANGRDEGVTKLL
FDDSPEAHGHGKILGGGMVGTHAGDMIGEIALAIEMGADAVDIGKTIHPHPTLGESIGMA
AEIAHGSCTDVPPQKK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory