PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4175 FitnessBrowser__acidovorax_3H11:Ac3H11_4175 (421 amino acids)

SeqID: Ac3H11_4175 FitnessBrowser__acidovorax_3H11:Ac3H11_4175
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4175 FitnessBrowser__acidovorax_3H11:Ac3H11_4175
MITTLFFLAALMVGVPIGVCLCLSGAVYILSIGSPVLFQSFPMQMFGGVDSYGLIAIPLF
ILIGEIMNSGGITRRLVDLSMAFIGSVKGGLAYVNILANMLVSSIIGSATAQVAIMSQVM
VPEMEKQGYDKTFAAGLTVYGGMLGPIIPPSVMFVVYSVLAQVAVGDMLIAGILPGVLLT
LLFFVVIALMGFVYNYPRSEKRTLAQRARTVVQASPTLLIPIIIVGSILSGLANPTESAA
VGALASALVGRYVTKEFRFSAMPAILLRSAIYSAIVLFLVAAAAVFSWLLIYGKVPQMVA
AWVQTVAHDPVTFLLLTNVILLVIGTVIDGIPGLIMTAPILLPIATEVYHIDPRHFGVVI
VVNLVLGLMTPPVGLSFFVASAVTGAKPGKMFIVTLPFFIISCVALVMLSLFPSLSLGLL
K