PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4370 FitnessBrowser__acidovorax_3H11:Ac3H11_4370 (396 amino acids)

SeqID: Ac3H11_4370 FitnessBrowser__acidovorax_3H11:Ac3H11_4370
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595990: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4370 FitnessBrowser__acidovorax_3H11:Ac3H11_4370
LEHVKAAKAYCTPCINHCQQCNSQIIEGAAPCRPMSTNLPCVLMRGGTSRGPFFLADWLP
QAPEARDRTLIAALGSPHELQIDGLGGGNSLTSKVAIVSRSTQPDCDVDYLFAQVSVQEA
RVDTRPNCGNMLAGVGPFAIEQGLVAPSGQGTTRVRVYNVNTRSRIDVQVCTAGGQVHYD
GDVRIDGVKGTAAPVLMNFLDAWGAVTGQIFPTGQRIDHIQGLDVTCIDAAQVMVLVRAA
DLGLRGDETPAELDTNTALLARLEALRLEAGQRMGMGDVTHSVLPKPVIVSPGTSPGCVV
SRYFTPHQCHRSHAVTGAIGVAAASVLPGTVATDERSPPSAGLRRVEVQHPAGRIQVEVE
LSEVDGQFKLVQAALVRTARKILEGTLFVPESAPAH