PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4470 FitnessBrowser__acidovorax_3H11:Ac3H11_4470 (304 amino acids)

SeqID: Ac3H11_4470 FitnessBrowser__acidovorax_3H11:Ac3H11_4470
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596773: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4470 FitnessBrowser__acidovorax_3H11:Ac3H11_4470
MPSTNPRTYDATPSRKVAFLGLGVMGYPMAGHLALAGHEVTVYNRTATKSVAWCAEYAGA
KAPKHATTPREAAAGADIVFCCVGNDNDLRSVTLGADGAFAGMQPGAIFVDHTTASAEVA
RELYAAAKALGLQFVDAPVSGGQAGAQNGQLTVMCGGDAAAFDAAQPVATAFSRAFTLLG
ESGSGQLAKMVNQICIAGLVQGLSEAVAFGQNAGLDMKQVLDVIGKGAAQSWQMDNRGKT
MVDGKFDFGFAVDWMRKDLGLVLDEAKRNGSRVPVTALVDQFYADVQQMGGNRWDTSSLI
KRLK