PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4821 FitnessBrowser__acidovorax_3H11:Ac3H11_4821 (467 amino acids)

SeqID: Ac3H11_4821 FitnessBrowser__acidovorax_3H11:Ac3H11_4821
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4821 FitnessBrowser__acidovorax_3H11:Ac3H11_4821
MTALHDLPAHELLAAYRQRTLSPVEVTQAVLAHIERWEPHIKATYLLRPEAALEQARASE
ARWLRGEPKGLLDGVPSTIKENIATQGDPTPLGTAAVELAPAAADAPPAARMREAGAVVV
AKTTMPDYGMLSSGLSTFHPLSRNPWDVSKGPGGSSAGGGAAAAAGYGPLHIGTDIGGSL
RLPASWCGIFSLKPSLGRIPIDPPYTGRAAGPMTRTVADAALMMQVLSQPDARDSMSLPA
QDIAWSQFNKGAERLRGLRIGVLLDAGCGLPVEPEVKAAVEHAARLMEAAGATIVPMQPF
MTQAMLDGMDHFWRMRSHTDLQALPAARRDKVLPYIRTWADSAAGLSGAEVFNASQQFHL
TRVAAVKACSAFDYVISPVAPNVAFQAELPSPTNDPLRPLEHIGFTVPFNMSEQPAASVN
CGYTRAGLPIGLQIAGARFDDLGVLQVAHAFELIREPQRAWPQPPAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory