PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_4925 FitnessBrowser__acidovorax_3H11:Ac3H11_4925 (744 amino acids)

SeqID: Ac3H11_4925 FitnessBrowser__acidovorax_3H11:Ac3H11_4925
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_4925 FitnessBrowser__acidovorax_3H11:Ac3H11_4925
MTTQQPTIIYTLTDEAPRLATASFLPLIRTFAAPAGINVVESDISVAARVLGEFPEFLKE
EQRAPNTLAELGKKTLQPDANIIKLPNISASVSQLKAAIAELQSKGYALPDYPDQPKDDK
EKDIKARYGKCIGSAVNPVLREGNSDRRAPKAVKEYARKNPHSMGEWSQASRSHVSHMHH
GDFYHGEKSMTLDRARDVKMELITKSGKTIILKPKVSLLDREVIDSMFMSKKALLEFYEK
EIEDARKTGVMFSLHVKATMMKVSHPIVFGHCVRIFYKDAFAKHAKTFDELGVNVNNGMV
DLYSKIETLPQSQRDEIKRDLHACHEHRPELAMVDSAKGITNFHSPNDIIVDASMPAMIR
NSGKMWDANGRLKDVKAVMPESTFARIYQEIINFCKWHGAFDPKTMGTVPNVGLMAQQAE
EYGSHDKTFEIAEDGVANITDLATGEVLLSQNVEQGDIWRMCQVKDAAIRDWVKLAVNRA
RNSGMPVVFWLDSYRPHEKELITKVKMYLHEHNTVGLDIQIMSQVRAMRYTLERVIRGLD
TISATGNILRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEEN
HLRWDSLGEFLALAVSLEDLGQKTGNAKAKILAQTLDAATGKLLDNNKNPSPKTGQLDNR
GSQFYLAMYWAQELAAQTSDADLAAKFAPLAKLLTANEQKIVDELNAVQGQPTDIGGYYM
PDVAKLDAVMRPSKTLNDALNTVK