PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_610 FitnessBrowser__acidovorax_3H11:Ac3H11_610 (356 amino acids)

SeqID: Ac3H11_610 FitnessBrowser__acidovorax_3H11:Ac3H11_610
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 1706206: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_610 FitnessBrowser__acidovorax_3H11:Ac3H11_610
MKRAIFKAVLASMALTAIGATSVASAQDKGAIGISMPTKSSARWIADGDNMVKVLKERGY
KTDLQYADDDIPNQLAQIENMITKGAKVLVIASIDGTTLSKALQNAADKGVKVIAYDRLI
KGSKNVDYYATFDNFQVGVLQATSIVDKLGLKQGKGPFNIELFGGSPDDNNAFFFYDGAM
SVLQPYIDSGKLVVRSKQTGMNKVGTLRWDGSVAQARMDNLLSAYYGKDKVHAVLSPYDG
ISIGILSSLKGVGYCTAQQPCPVVSGQDAEVPSIKSILKGEQSSTVFKDTRELAKVAANM
VDAVLTGKQPEINDTKTYNNGVKVVPSYLLKPVAVDSSNWNAVLVGSGYYKESQIK