PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_719 FitnessBrowser__acidovorax_3H11:Ac3H11_719 (456 amino acids)

SeqID: Ac3H11_719 FitnessBrowser__acidovorax_3H11:Ac3H11_719
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00713: NA_DICARBOXYL_SYMP_1 Pattern - Cytoplasmic Membrane]
    Motif-            CytoplasmicMembrane           [matched PS00714: NA_DICARBOXYL_SYMP_2 Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118394: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_719 FitnessBrowser__acidovorax_3H11:Ac3H11_719
MHAISAPTAHPVRLPFYRQLYFQVVLAIVLGVLLGHFEPSYGEALKPLGDAFIKLVKMII
APVIFLTIVTGIAGMSQLSTVGRVFGKAMAYFLFFSTLALVVGLVVANVVQPGAGMNINV
ADLDQSAVKGYVAKSHEMTLTGFALDIIPKTLVSPFVGDNILQVLLVAVLFGVGLAMVGD
AGRPVLNFLDALTTPVFKVVGIVMKAAPLGAFGAMAFTIGKFGLGSLVNLAWLVGSFYIT
SLLFVVVILGFVARLCGFSVFKLCRYLKAELMLVLGTSSSESALPSLMEKMEKAGCSKSV
VGLVVPTGYSFNLDGTNIYMTLAALFIAQATNTELTLGHQVALLLVAMLSSKGAAGVTGA
GFITLAATLAVVPEVPVAGMALILGVDRFMSECRSLTNFIGNAVATVVVSRWENALDHER
LDAALNGHPLPAAVTAAAAPVVPADMPVGAVARTVA