PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Ac3H11_779 FitnessBrowser__acidovorax_3H11:Ac3H11_779 (318 amino acids)

SeqID: Ac3H11_779 FitnessBrowser__acidovorax_3H11:Ac3H11_779
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598757: 1-phosphofructokinase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    Extracellular          0.14
    OuterMembrane          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Ac3H11_779 FitnessBrowser__acidovorax_3H11:Ac3H11_779
VPALITLTLNPALDLATTTAQVAPTHKLRCGPVQRFAGGGGINVARVLHRLGADVLAWAL
TGGAAGAQVQQLLADEGVPTALQAIAGDTRENFSVVETITGQEFRFVLPGPTLQAAEWQA
CLDALAALPTPPRWLIASGSLPPGTPDDFYARLARALSGRGVRMVVDTSGPPLAAALQAG
VALVKPSLRELRELVQQPLEQAADWCAAAQSLVHSGAAETVALSLGEQGAVLATRTGVWQ
APALNMPATTGTTGAGDCFLAALVWALDRGDAPAEALRWGVAAGAAALLHPGTTLAQAGD
LQRLVHSVPAPVAVATQP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory