PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BPHYT_RS00200 FitnessBrowser__BFirm:BPHYT_RS00200 (467 amino acids)

SeqID: BPHYT_RS00200 FitnessBrowser__BFirm:BPHYT_RS00200
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BPHYT_RS00200 FitnessBrowser__BFirm:BPHYT_RS00200
MPTVADAAASIRCGELTPVELVQRCLDSIKTHNPTLHAFGDVYAEEALRYAETLTREAKE
NRTRGGLHGVPFAIKDLFATAGLRTTRGSLTAMNWVPQEDAPVIRRLKEAGAILLGKAAT
TEFGWSGASYSRVFGNGCNPWDARLTSGGSSSGSAISVAARMVPASLGSDGGGSVRIPSA
FCGVFAMKGSHGRIPTWPWSATEMLSHAGPITRTVRDSALLFDVLAGPDSRDHQALPAAT
GSYLARCEEPLKRVRVAFCPTLFGVDVDPEISRVVGAAVERIARALPIDLEMPVLGWHDP
LPTFETLWVAGRGIVYGQTLKNCADQLDPGFARLIGRASDYSLEDYLTAIQRRATFACQV
HALFDTYDFLLTPTLPILPFDADLIAPPELDTHDSALPWACWTPFTYPFNLSGNPAASLP
CGWSDTGLPVGLQVVGPRFADADVLQFCSAIEAIMPWAHRLPPMLGV